niedachu/MateriaSim

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面向多组分、多场景材料研究的可追溯分子模拟框架。 MateriaSim 将材料模型、体系构建、模拟协议、研究任务和执行管理分开组织,让不同研究复用同一套计算与证据管理流程。GROMACS 负责底层分子动力学,MateriaSim 负责输入校验、任务编排、受控运行和结果追溯。 项目采用原生 macOS/Linux 路线,不绑定特定大模型或 agent 宿主。当前计算后端为 GROMACS;多材料扩展围绕共享组件和研究包推进,具体支持范围见下文。 单实验和研究包也可以直接调用共用工作流,不要求启用 Campaign 或 agent。能力由现有引擎、构建器、场景和分析注册表组合;当前采用静态内置组件,不加载任意第三方插件代码。 历史案例目录保留来源资产和已有环境,不是另一套公共核心。新的 Run、轨迹、检查点与分析输出使用明确的仓库外目录;Git 管理源码与研究定义,不替代科研数据备份。 使用独立 Python 3.9+ 环境,从仓库根安装: 核心 Python 包无第三方运行依赖。需要基于 MDAnalysis 的分析时,安装可选分析依赖: GROMACS 与 Packmol 是独立的原生工具,不会由上述命令自动安装。自动装填需要 Packmol;具体工具版本、平台环境与配置要求见模拟指南。macOS 与 Linux 分别建立环境,不跨平台复制虚拟环境或二进制。 以上命令只查询、校验或预览,不启动模拟。配置校验通过不等于模型已经科学验证。 执行前明确新的仓库外输出位置、资源预算与用途。Campaign 还需要独立用户授权;agent 决策不能修改力场、扩充预算或绕过人工控制。接口不要求使用某个模型供应商,实际宿主接入和权限隔离需单独配置与验收。 研究包可参考 ZIL 数量与重复及…

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Read the full README ↗ · Preview checked 2026-11-03T08:08:23.555Z

Inside the original README — Document outline
  1. MateriaSim
  2. 核心能力
  3. 架构
  4. 快速开始
  5. 环境与安装
  6. 检查环境与输入
  7. 选择执行方式
  8. 当前支持范围
  9. 验证与开发
  10. 文档导航

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Owner
niedachu
Primary language
Python
Stars
303
Forks
11
Open issues + pull requests
0
License
Not reported — inspect the license file
Archived
No
Default branch
main
Created
2026-09-14T15:37:27.000Z
Last push
2026-09-17T16:51:47.000Z

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